IL_8T2Z_132

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8T2Z|1|A1|U|3354, 8T2Z|1|A1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_132 not in the Motif Atlas

Homologous match to IL_8P9A_363

Geometric discrepancy: 0.2007

The information below is about IL_8P9A_363

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8T2Z|1|A1|C|3349
8T2Z|1|A1|C|3350
*
8T2Z|1|A1|G|3353
8T2Z|1|A1|U|3354
8T2Z|1|A1|U|3355
8T2Z|1|A1|G|3356

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BI

40S ribosomal protein S8-A