IL_8T2Z_184

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8T2Z|1|B5|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_184 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.1913

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8T2Z|1|B5|G|868
8T2Z|1|B5|A|869
*
8T2Z|1|B5|U|958
8T2Z|1|B5|U|959
8T2Z|1|B5|U|960

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BN

40S ribosomal protein S13

Chain Bb

40S ribosomal protein S27-A