IL_8T2Z_194

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8T2Z|1|B5|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_194 not in the Motif Atlas

Homologous match to IL_8P9A_427

Geometric discrepancy: 0.3138

The information below is about IL_8P9A_427

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8T2Z|1|B5|G|1051
8T2Z|1|B5|U|1052
8T2Z|1|B5|G|1053
*
8T2Z|1|B5|C|1066
8T2Z|1|B5|C|1067

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BB

RPS1A isoform 1

Chain BR

40S ribosomal protein S17-A

Chain Bb

40S ribosomal protein S27-A