IL_8T2Z_213

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

8T2Z|1|B5|U|1353, 8T2Z|1|B5|U|1370, 8T2Z|1|B5|A|1371, 8T2Z|1|B5|U|1372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_213 not in the Motif Atlas

Geometric match to IL_5W1H_001

Geometric discrepancy: 0.2695

The information below is about IL_5W1H_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

8T2Z|1|B5|G|1352
8T2Z|1|B5|U|1353
8T2Z|1|B5|G|1354
*
8T2Z|1|B5|U|1369
8T2Z|1|B5|U|1370
8T2Z|1|B5|A|1371
8T2Z|1|B5|U|1372
8T2Z|1|B5|C|1373

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BQ

40S ribosomal protein S16-A

Chain BT

40S ribosomal protein S19-A

Chain BU

RPS20 isoform 1