IL_8T30_159

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T30_159 not in the Motif Atlas

Homologous match to IL_8C3A_408

Geometric discrepancy: 0.3407

The information below is about IL_8C3A_408

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8T30|1|B5|C|270
8T30|1|B5|A|271
8T30|1|B5|U|272
8T30|1|B5|G|273
*
8T30|1|B5|U|283
8T30|1|B5|G|284
8T30|1|B5|G|285

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A