IL_8T30_162
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T30_162 not in the Motif Atlas
- Homologous match to IL_8P9A_392
- Geometric discrepancy: 0.1867
- The information below is about IL_8P9A_392
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01372.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8T30|1|B5|U|318
8T30|1|B5|U|319
8T30|1|B5|U|320
8T30|1|B5|C|321
8T30|1|B5|G|322
8T30|1|B5|A|323
*
8T30|1|B5|U|345
8T30|1|B5|G|346
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BI
- 40S ribosomal protein S8-A
- Chain BL
- 40S ribosomal protein S11-A
Coloring options: