IL_8T30_180

3D structure

PDB id

8T30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GCUAACCUUGAGUCC*GCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

8T30|1|B5|C|704, 8T30|1|B5|U|705, 8T30|1|B5|A|706, 8T30|1|B5|A|707, 8T30|1|B5|C|708, 8T30|1|B5|C|709, 8T30|1|B5|U|710, 8T30|1|B5|U|711, 8T30|1|B5|G|712, 8T30|1|B5|G|714, 8T30|1|B5|C|716, 8T30|1|B5|C|724, 8T30|1|B5|G|730, 8T30|1|B5|C|731, 8T30|1|B5|G|732, 8T30|1|B5|A|733, 8T30|1|B5|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T30|1|B5|G|703
8T30|1|B5|C|704
8T30|1|B5|U|705
8T30|1|B5|A|706
8T30|1|B5|A|707
8T30|1|B5|C|708
8T30|1|B5|C|709
8T30|1|B5|U|710
8T30|1|B5|U|711
8T30|1|B5|G|712
8T30|1|B5|A|713
8T30|1|B5|G|714
8T30|1|B5|U|715
8T30|1|B5|C|716
8T30|1|B5|C|717
*
8T30|1|B5|G|723
8T30|1|B5|C|724
8T30|1|B5|U|725
8T30|1|B5|C|726
8T30|1|B5|U|727
8T30|1|B5|U|728
8T30|1|B5|G|729
8T30|1|B5|G|730
8T30|1|B5|C|731
8T30|1|B5|G|732
8T30|1|B5|A|733
8T30|1|B5|A|734
8T30|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A