IL_8T30_218
3D structure
- PDB id
- 8T30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- GGGAUAG*CUUCAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T30_218 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.1779
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8T30|1|B5|G|1540
8T30|1|B5|G|1541
8T30|1|B5|G|1542
8T30|1|B5|A|1543
8T30|1|B5|U|1544
8T30|1|B5|A|1545
8T30|1|B5|G|1546
*
8T30|1|B5|C|1565
8T30|1|B5|U|1566
8T30|1|B5|U|1567
8T30|1|B5|C|1568
8T30|1|B5|A|1569
8T30|1|B5|A|1570
8T30|1|B5|C|1571
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BS
- 40S ribosomal protein S18-A
- Chain BT
- 40S ribosomal protein S19-A
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