IL_8T3D_007
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- AU*AGUUGU
- Length
- 8 nucleotides
- Bulged bases
- 8T3D|1|A1|U|147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_007 not in the Motif Atlas
- Homologous match to IL_8C3A_007
- Geometric discrepancy: 0.0806
- The information below is about IL_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8T3D|1|A1|A|123
8T3D|1|A1|U|124
*
8T3D|1|A1|A|144
8T3D|1|A1|G|145
8T3D|1|A1|U|146
8T3D|1|A1|U|147
8T3D|1|A1|G|148
8T3D|1|A1|U|149
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AG
- 60S ribosomal protein L8-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Ah
- 60S ribosomal protein L35-A
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