IL_8T3D_018

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG

Length

34 nucleotides

Bulged bases

8T3D|1|A1|G|442, 8T3D|1|A1|U|444, 8T3D|1|A1|U|446, 8T3D|1|A1|U|447, 8T3D|1|A1|U|449, 8T3D|1|A1|G|450, 8T3D|1|A1|A|486, 8T3D|1|A1|U|487, 8T3D|1|A1|U|489, 8T3D|1|A1|C|490, 8T3D|1|A1|C|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|A1|C|435
8T3D|1|A1|A|436
8T3D|1|A1|G|437
8T3D|1|A1|A|438
8T3D|1|A1|C|439
8T3D|1|A1|A|440
8T3D|1|A1|U|441
8T3D|1|A1|G|442
8T3D|1|A1|G|443
8T3D|1|A1|U|444
8T3D|1|A1|G|445
8T3D|1|A1|U|446
8T3D|1|A1|U|447
8T3D|1|A1|U|448
8T3D|1|A1|U|449
8T3D|1|A1|G|450
8T3D|1|A1|U|451
8T3D|1|A1|A|486
8T3D|1|A1|U|487
8T3D|1|A1|U|488
8T3D|1|A1|U|489
8T3D|1|A1|C|490
8T3D|1|A1|A|491
8T3D|1|A1|C|492
8T3D|1|A1|U|493
8T3D|1|A1|G|494
8T3D|1|A1|G|495
*
8T3D|1|A1|C|618
8T3D|1|A1|A|619
8T3D|1|A1|U|620
8T3D|1|A1|A|621
8T3D|1|A1|A|622
8T3D|1|A1|U|623
8T3D|1|A1|G|624

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AE

60S ribosomal protein L6-A

Chain AP

60S ribosomal protein L17-A

Chain Ae

RPL32 isoform 1

Chain Af

60S ribosomal protein L33-A