IL_8T3D_021
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8T3D|1|A1|U|534, 8T3D|1|A1|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_021 not in the Motif Atlas
- Homologous match to IL_8P9A_248
- Geometric discrepancy: 0.1178
- The information below is about IL_8P9A_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43858.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T3D|1|A1|G|531
8T3D|1|A1|A|532
8T3D|1|A1|A|533
8T3D|1|A1|U|534
8T3D|1|A1|G|535
8T3D|1|A1|U|536
8T3D|1|A1|A|537
8T3D|1|A1|G|538
*
8T3D|1|A1|U|553
8T3D|1|A1|A|554
8T3D|1|A1|U|555
8T3D|1|A1|U|556
8T3D|1|A1|A|557
8T3D|1|A1|U|558
8T3D|1|A1|A|559
8T3D|1|A1|G|560
8T3D|1|A1|C|561
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AM
- 60S ribosomal protein L14-A
- Chain AS
- 60S ribosomal protein L20
Coloring options: