IL_8T3D_053

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UCUAGACAG*CGAA

Length

13 nucleotides

Bulged bases

8T3D|1|A1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|A1|U|1218
8T3D|1|A1|C|1219
8T3D|1|A1|U|1220
8T3D|1|A1|A|1221
8T3D|1|A1|G|1222
8T3D|1|A1|A|1223
8T3D|1|A1|C|1224
8T3D|1|A1|A|1225
8T3D|1|A1|G|1226
*
8T3D|1|A1|C|1284
8T3D|1|A1|G|1285
8T3D|1|A1|A|1286
8T3D|1|A1|A|1287

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AS

60S ribosomal protein L20

Chain Am

Ubiquitin-60S ribosomal protein L40