IL_8T3D_072
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8T3D|1|A1|U|1716, 8T3D|1|A1|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_072 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.1443
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69543.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8T3D|1|A1|C|1711
8T3D|1|A1|G|1712
8T3D|1|A1|G|1713
8T3D|1|A1|A|1714
8T3D|1|A1|A|1715
8T3D|1|A1|U|1716
8T3D|1|A1|U|1717
*
8T3D|1|A1|G|1727
8T3D|1|A1|G|1728
8T3D|1|A1|A|1729
8T3D|1|A1|G|1730
8T3D|1|A1|A|1731
8T3D|1|A1|U|1732
8T3D|1|A1|G|1733
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain AZ
- 60S ribosomal protein L27-A
- Chain Ac
- 60S ribosomal protein L30
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BN
- 40S ribosomal protein S13
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