IL_8T3D_106

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(PSU)UG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_106 not in the Motif Atlas

Homologous match to IL_8C3A_112

Geometric discrepancy: 0.1318

The information below is about IL_8C3A_112

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8T3D|1|A1|PSU|2826
8T3D|1|A1|U|2827
8T3D|1|A1|G|2828
*
8T3D|1|A1|U|2862
8T3D|1|A1|G|2863

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10