IL_8T3D_128

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8T3D|1|A1|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_128 not in the Motif Atlas

Geometric match to IL_3SNP_004

Geometric discrepancy: 0.2265

The information below is about IL_3SNP_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8T3D|1|A1|C|3193
8T3D|1|A1|C|3194
*
8T3D|1|A1|G|3197
8T3D|1|A1|U|3198
8T3D|1|A1|G|3199

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AM

60S ribosomal protein L14-A

Chain AO

60S ribosomal protein L16-A