3D structure

PDB id
8T3D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.95 Å

Loop

Sequence
GUA*UC
Length
5 nucleotides
Bulged bases
8T3D|1|A1|U|3341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T3D_137 not in the Motif Atlas
Homologous match to IL_8C3A_140
Geometric discrepancy: 0.1268
The information below is about IL_8C3A_140
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

8T3D|1|A1|G|3340
8T3D|1|A1|U|3341
8T3D|1|A1|A|3342
*
8T3D|1|A1|U|3363
8T3D|1|A1|C|3364

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AW
RPL24A isoform 1

Coloring options:


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