IL_8T3D_147

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

8T3D|1|A4|G|95

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_147 not in the Motif Atlas

Homologous match to IL_8P9A_371

Geometric discrepancy: 0.1237

The information below is about IL_8P9A_371

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8T3D|1|A4|U|64
8T3D|1|A4|A|65
8T3D|1|A4|A|66
*
8T3D|1|A4|U|93
8T3D|1|A4|C|94
8T3D|1|A4|G|95
8T3D|1|A4|A|96

Current chains

Chain A4

5.8 S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AY

60S ribosomal protein L26-A

Chain Ah

60S ribosomal protein L35-A

Chain Aj

60S ribosomal protein L37-A