IL_8T3D_153
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_153 not in the Motif Atlas
- Homologous match to IL_8P9A_378
- Geometric discrepancy: 0.2194
- The information below is about IL_8P9A_378
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.4
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8T3D|1|B5|U|58
8T3D|1|B5|C|59
8T3D|1|B5|U|60
8T3D|1|B5|A|61
8T3D|1|B5|A|62
8T3D|1|B5|G|63
*
8T3D|1|B5|C|87
8T3D|1|B5|U|88
8T3D|1|B5|G|89
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BG
- 40S ribosomal protein S6-A
- Chain BY
- 40S ribosomal protein S24-A
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