IL_8T3D_173

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAUAC*GUAAUUG

Length

13 nucleotides

Bulged bases

8T3D|1|B5|A|483, 8T3D|1|B5|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|B5|C|479
8T3D|1|B5|G|480
8T3D|1|B5|A|481
8T3D|1|B5|U|482
8T3D|1|B5|A|483
8T3D|1|B5|C|484
*
8T3D|1|B5|G|503
8T3D|1|B5|U|504
8T3D|1|B5|A|505
8T3D|1|B5|A|506
8T3D|1|B5|U|507
8T3D|1|B5|U|508
8T3D|1|B5|G|509

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A