IL_8T3D_174
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GAG*CGAGGAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_174 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.2367
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
8T3D|1|B5|G|514
8T3D|1|B5|A|515
8T3D|1|B5|G|516
*
8T3D|1|B5|C|536
8T3D|1|B5|G|537
8T3D|1|B5|A|538
8T3D|1|B5|G|539
8T3D|1|B5|G|540
8T3D|1|B5|A|541
8T3D|1|B5|A|542
8T3D|1|B5|C|543
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BJ
- 40S ribosomal protein S9-A
- Chain Be
- 40S ribosomal protein S30-A
Coloring options: