IL_8T3D_178

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8T3D|1|B5|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3D_178 not in the Motif Atlas

Homologous match to IL_8P9A_403

Geometric discrepancy: 0.1598

The information below is about IL_8P9A_403

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8T3D|1|B5|G|557
8T3D|1|B5|U|558
8T3D|1|B5|C|559
*
8T3D|1|B5|G|586
8T3D|1|B5|C|587

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

RPS3 isoform 1

Chain BX

40S ribosomal protein S23-A

Chain Be

40S ribosomal protein S30-A