IL_8T3D_180
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 8T3D|1|B5|A|619
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3D_180 not in the Motif Atlas
- Homologous match to IL_8C3A_426
- Geometric discrepancy: 0.1335
- The information below is about IL_8C3A_426
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.4
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
8T3D|1|B5|G|616
8T3D|1|B5|U|617
8T3D|1|B5|U|618
8T3D|1|B5|A|619
8T3D|1|B5|A|620
8T3D|1|B5|A|621
8T3D|1|B5|A|622
*
8T3D|1|B5|U|1104
8T3D|1|B5|C|1105
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- RPS2 isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Ba
- RPS26B isoform 1
Coloring options: