IL_8T3D_217

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AAAUA*UUCUU

Length

10 nucleotides

Bulged bases

8T3D|1|B5|A|1346, 8T3D|1|B5|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|B5|A|1344
8T3D|1|B5|A|1345
8T3D|1|B5|A|1346
8T3D|1|B5|U|1347
8T3D|1|B5|A|1348
*
8T3D|1|B5|U|1377
8T3D|1|B5|U|1378
8T3D|1|B5|C|1379
8T3D|1|B5|U|1380
8T3D|1|B5|U|1381

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

RPS3 isoform 1

Chain BQ

40S ribosomal protein S16-A

Chain BU

RPS20 isoform 1