IL_8T3D_238

3D structure

PDB id

8T3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AUGUAUUGGUUACCCAUC*GUAAGGCUUUCAU

Length

31 nucleotides

Bulged bases

8T3D|1|EC|A|6769, 8T3D|1|EC|U|6770, 8T3D|1|EC|G|6773, 8T3D|1|EC|U|6774, 8T3D|1|EC|A|6776, 8T3D|1|EC|C|6778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3D|1|EC|A|6765
8T3D|1|EC|U|6766
8T3D|1|EC|G|6767
8T3D|1|EC|U|6768
8T3D|1|EC|A|6769
8T3D|1|EC|U|6770
8T3D|1|EC|U|6771
8T3D|1|EC|G|6772
8T3D|1|EC|G|6773
8T3D|1|EC|U|6774
8T3D|1|EC|U|6775
8T3D|1|EC|A|6776
8T3D|1|EC|C|6777
8T3D|1|EC|C|6778
8T3D|1|EC|C|6779
8T3D|1|EC|A|6780
8T3D|1|EC|U|6781
8T3D|1|EC|C|6782
*
8T3D|1|EC|G|6814
8T3D|1|EC|U|6815
8T3D|1|EC|A|6816
8T3D|1|EC|A|6817
8T3D|1|EC|G|6818
8T3D|1|EC|G|6819
8T3D|1|EC|C|6820
8T3D|1|EC|U|6821
8T3D|1|EC|U|6822
8T3D|1|EC|U|6823
8T3D|1|EC|C|6824
8T3D|1|EC|A|6825
8T3D|1|EC|U|6826

Current chains

Chain EC

TSV IRES

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain E

RPL1A isoform 1