IL_8T3E_005
3D structure
- PDB id
- 8T3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3E_005 not in the Motif Atlas
- Homologous match to IL_8P9A_235
- Geometric discrepancy: 0.0998
- The information below is about IL_8P9A_235
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_65594.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T3E|1|A1|C|82
8T3E|1|A1|U|83
8T3E|1|A1|U|84
8T3E|1|A1|A|85
8T3E|1|A1|G|86
8T3E|1|A1|U|87
8T3E|1|A1|A|88
8T3E|1|A1|A|89
*
8T3E|1|A1|U|97
8T3E|1|A1|G|98
8T3E|1|A1|A|99
8T3E|1|A1|A|100
8T3E|1|A1|G|101
8T3E|1|A1|C|102
8T3E|1|A1|G|103
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ao
- 60S ribosomal protein L42-A
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