IL_8T3E_006

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

8T3E|1|A1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_006 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.1182

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8T3E|1|A1|A|123
8T3E|1|A1|U|124
*
8T3E|1|A1|A|144
8T3E|1|A1|G|145
8T3E|1|A1|U|146
8T3E|1|A1|U|147
8T3E|1|A1|G|148
8T3E|1|A1|U|149

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AG

60S ribosomal protein L8-A

Chain AN

60S ribosomal protein L15-A