IL_8T3E_010

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGG*CUUUGUA

Length

10 nucleotides

Bulged bases

8T3E|1|A1|G|170, 8T3E|1|A1|U|248, 8T3E|1|A1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|A1|U|169
8T3E|1|A1|G|170
8T3E|1|A1|G|171
*
8T3E|1|A1|C|247
8T3E|1|A1|U|248
8T3E|1|A1|U|249
8T3E|1|A1|U|250
8T3E|1|A1|G|251
8T3E|1|A1|U|252
8T3E|1|A1|A|253

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain AL

60S ribosomal protein L13-A

Chain Ah

60S ribosomal protein L35-A