IL_8T3E_018

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGAUAAAUC*GGAAUAC

Length

16 nucleotides

Bulged bases

8T3E|1|A1|A|519, 8T3E|1|A1|U|520

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_018 not in the Motif Atlas

Homologous match to IL_8P9A_247

Geometric discrepancy: 0.1219

The information below is about IL_8P9A_247

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58126.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8T3E|1|A1|G|517
8T3E|1|A1|G|518
8T3E|1|A1|A|519
8T3E|1|A1|U|520
8T3E|1|A1|A|521
8T3E|1|A1|A|522
8T3E|1|A1|A|523
8T3E|1|A1|U|524
8T3E|1|A1|C|525
*
8T3E|1|A1|G|567
8T3E|1|A1|G|568
8T3E|1|A1|A|569
8T3E|1|A1|A|570
8T3E|1|A1|U|571
8T3E|1|A1|A|572
8T3E|1|A1|C|573

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AF

60S ribosomal protein L7-A

Chain AM

60S ribosomal protein L14-A

Chain AS

60S ribosomal protein L20