IL_8T3E_025

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_025 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1126

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8T3E|1|A1|C|758
8T3E|1|A1|U|759
8T3E|1|A1|G|760
8T3E|1|A1|A|761
8T3E|1|A1|U|762
8T3E|1|A1|G|763
*
8T3E|1|A1|C|768
8T3E|1|A1|G|769
8T3E|1|A1|G|770
8T3E|1|A1|A|771
8T3E|1|A1|U|772
8T3E|1|A1|G|773

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain Aa

60S ribosomal protein L28

Chain Ao

60S ribosomal protein L42-A