IL_8T3E_054

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8T3E|1|A1|A|1263, 8T3E|1|A1|G|1264

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_054 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.3008

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8T3E|1|A1|G|1262
8T3E|1|A1|A|1263
8T3E|1|A1|G|1264
8T3E|1|A1|U|1265
8T3E|1|A1|G|1266
*
8T3E|1|A1|C|1275
8T3E|1|A1|U|1276
8T3E|1|A1|C|1277

Current chains

Chain A1

25S rRNA

Nearby chains