IL_8T3E_074

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_074 not in the Motif Atlas

Geometric match to IL_8C3A_484

Geometric discrepancy: 0.075

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

8T3E|1|A1|G|1898
8T3E|1|A1|G|1899
8T3E|1|A1|A|1900
8T3E|1|A1|A|1901
8T3E|1|A1|G|1902
8T3E|1|A1|U|1903
8T3E|1|A1|C|1904
8T3E|1|A1|G|1905
8T3E|1|A1|G|1906
*
8T3E|1|A1|C|2333
8T3E|1|A1|U|2334
8T3E|1|A1|G|2335
8T3E|1|A1|U|2336
8T3E|1|A1|C|2337

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23-A