IL_8T3E_096

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

8T3E|1|A1|C|2478, 8T3E|1|A1|C|2479, 8T3E|1|A1|A|2484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|A1|G|2466
8T3E|1|A1|G|2467
8T3E|1|A1|A|2468
8T3E|1|A1|G|2469
*
8T3E|1|A1|C|2476
8T3E|1|A1|G|2477
8T3E|1|A1|C|2478
8T3E|1|A1|C|2479
8T3E|1|A1|A|2480
8T3E|1|A1|G|2481
8T3E|1|A1|U|2482
8T3E|1|A1|G|2483
8T3E|1|A1|A|2484
8T3E|1|A1|A|2485
8T3E|1|A1|A|2486
8T3E|1|A1|U|2487
8T3E|1|A1|A|2488
8T3E|1|A1|C|2489

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

TSV IRES