IL_8T3E_105

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_105 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1244

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8T3E|1|A1|U|2835
8T3E|1|A1|C|2836
8T3E|1|A1|A|2837
8T3E|1|A1|A|2838
8T3E|1|A1|G|2839
*
8T3E|1|A1|C|2849
8T3E|1|A1|G|2850
8T3E|1|A1|A|2851
8T3E|1|A1|C|2852
8T3E|1|A1|A|2853

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain Am

Ubiquitin-60S ribosomal protein L40