IL_8T3E_191

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8T3E|1|B5|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_191 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2474

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8T3E|1|B5|U|893
8T3E|1|B5|U|894
8T3E|1|B5|G|895
8T3E|1|B5|U|896
8T3E|1|B5|C|897
8T3E|1|B5|A|898
8T3E|1|B5|G|899
*
8T3E|1|B5|C|910
8T3E|1|B5|U|911
8T3E|1|B5|U|912
8T3E|1|B5|G|913
8T3E|1|B5|G|914
8T3E|1|B5|A|915
8T3E|1|B5|U|916
8T3E|1|B5|U|917
8T3E|1|B5|U|918
8T3E|1|B5|A|919

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

RPS1A isoform 1

Chain BO

40S ribosomal protein S14-A