IL_8T3E_201

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8T3E|1|B5|C|1158, 8T3E|1|B5|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_201 not in the Motif Atlas

Homologous match to IL_8P9A_431

Geometric discrepancy: 0.3142

The information below is about IL_8P9A_431

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8T3E|1|B5|A|1157
8T3E|1|B5|C|1158
8T3E|1|B5|C|1159
8T3E|1|B5|A|1160
*
8T3E|1|B5|U|1617
8T3E|1|B5|C|1618
8T3E|1|B5|C|1619
8T3E|1|B5|C|1620
8T3E|1|B5|U|1621

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BF

Rps5p

Chain BQ

40S ribosomal protein S16-A

Chain Bc

RPS28A isoform 1