3D structure

PDB id
8T3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UGUAUUGGUUACCCAUC*GUAAGGCUUUCA
Length
29 nucleotides
Bulged bases
8T3E|1|EC|U|6770, 8T3E|1|EC|U|6774, 8T3E|1|EC|A|6776, 8T3E|1|EC|C|6777, 8T3E|1|EC|C|6778, 8T3E|1|EC|A|6816, 8T3E|1|EC|G|6818, 8T3E|1|EC|U|6822, 8T3E|1|EC|U|6823
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T3E|1|EC|U|6766
8T3E|1|EC|G|6767
8T3E|1|EC|U|6768
8T3E|1|EC|A|6769
8T3E|1|EC|U|6770
8T3E|1|EC|U|6771
8T3E|1|EC|G|6772
8T3E|1|EC|G|6773
8T3E|1|EC|U|6774
8T3E|1|EC|U|6775
8T3E|1|EC|A|6776
8T3E|1|EC|C|6777
8T3E|1|EC|C|6778
8T3E|1|EC|C|6779
8T3E|1|EC|A|6780
8T3E|1|EC|U|6781
8T3E|1|EC|C|6782
*
8T3E|1|EC|G|6814
8T3E|1|EC|U|6815
8T3E|1|EC|A|6816
8T3E|1|EC|A|6817
8T3E|1|EC|G|6818
8T3E|1|EC|G|6819
8T3E|1|EC|C|6820
8T3E|1|EC|U|6821
8T3E|1|EC|U|6822
8T3E|1|EC|U|6823
8T3E|1|EC|C|6824
8T3E|1|EC|A|6825

Current chains

Chain EC
TSV IRES

Nearby chains

Chain A1
Large subunit ribosomal RNA; LSU rRNA
Chain E
RPL1A isoform 1

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 2.1457 s
Application loaded.