IL_8T3E_238

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UUUG*CGUACGUGUA

Length

14 nucleotides

Bulged bases

8T3E|1|EC|U|6836, 8T3E|1|EC|A|6849, 8T3E|1|EC|C|6850, 8T3E|1|EC|G|6851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|EC|U|6834
8T3E|1|EC|U|6835
8T3E|1|EC|U|6836
8T3E|1|EC|G|6837
*
8T3E|1|EC|C|6846
8T3E|1|EC|G|6847
8T3E|1|EC|U|6848
8T3E|1|EC|A|6849
8T3E|1|EC|C|6850
8T3E|1|EC|G|6851
8T3E|1|EC|U|6852
8T3E|1|EC|G|6853
8T3E|1|EC|U|6854
8T3E|1|EC|A|6855

Current chains

Chain EC

TSV IRES

Nearby chains

Chain BF

Rps5p