IL_8T3E_240

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUGUAGAAUAAG*CUAC

Length

16 nucleotides

Bulged bases

8T3E|1|A1|U|2453, 8T3E|1|A1|G|2454, 8T3E|1|A1|G|2457, 8T3E|1|A1|A|2458, 8T3E|1|A1|U|2460, 8T3E|1|A1|U|2493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|A1|G|2452
8T3E|1|A1|U|2453
8T3E|1|A1|G|2454
8T3E|1|A1|U|2455
8T3E|1|A1|A|2456
8T3E|1|A1|G|2457
8T3E|1|A1|A|2458
8T3E|1|A1|A|2459
8T3E|1|A1|U|2460
8T3E|1|A1|A|2461
8T3E|1|A1|A|2462
8T3E|1|A1|G|2463
*
8T3E|1|A1|C|2492
8T3E|1|A1|U|2493
8T3E|1|A1|A|2494
8T3E|1|A1|C|2495

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

TSV IRES