IL_8T3E_243

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3E_243 not in the Motif Atlas

Homologous match to IL_8CRE_428

Geometric discrepancy: 0.0924

The information below is about IL_8CRE_428

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

8T3E|1|B5|A|746
8T3E|1|B5|C|747
*
8T3E|1|B5|G|802
8T3E|1|B5|A|803
8T3E|1|B5|A|804
8T3E|1|B5|U|805

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BH

40S ribosomal protein S7-A

Chain BL

40S ribosomal protein S11-A

Chain BW

RPS22A isoform 1

Chain BX

40S ribosomal protein S23-A