IL_8T3F_037
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GAGGUAA*(PSU)AAA(PSU)AU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3F_037 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.0894
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8T3F|1|A1|G|991
8T3F|1|A1|A|992
8T3F|1|A1|G|993
8T3F|1|A1|G|994
8T3F|1|A1|U|995
8T3F|1|A1|A|996
8T3F|1|A1|A|997
*
8T3F|1|A1|PSU|1052
8T3F|1|A1|A|1053
8T3F|1|A1|A|1054
8T3F|1|A1|A|1055
8T3F|1|A1|PSU|1056
8T3F|1|A1|A|1057
8T3F|1|A1|U|1058
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A3
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S ribosomal protein L7-A
- Chain AI
- 60S ribosomal protein L10
- Chain AS
- 60S ribosomal protein L20
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- RPL29 isoform 1
Coloring options: