IL_8T3F_048
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 8T3F|1|A1|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3F_048 not in the Motif Atlas
- Homologous match to IL_8P9A_278
- Geometric discrepancy: 0.2264
- The information below is about IL_8P9A_278
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
8T3F|1|A1|A|1180
8T3F|1|A1|U|1181
8T3F|1|A1|A|1182
*
8T3F|1|A1|U|1324
8T3F|1|A1|U|1325
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L7-A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain AS
- 60S ribosomal protein L20
- Chain Af
- 60S ribosomal protein L33-A
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