IL_8T3F_097

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

8T3F|1|A1|A|2484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3F|1|A1|G|2466
8T3F|1|A1|G|2467
8T3F|1|A1|A|2468
8T3F|1|A1|G|2469
*
8T3F|1|A1|C|2476
8T3F|1|A1|G|2477
8T3F|1|A1|C|2478
8T3F|1|A1|C|2479
8T3F|1|A1|A|2480
8T3F|1|A1|G|2481
8T3F|1|A1|U|2482
8T3F|1|A1|G|2483
8T3F|1|A1|A|2484
8T3F|1|A1|A|2485
8T3F|1|A1|A|2486
8T3F|1|A1|U|2487
8T3F|1|A1|A|2488
8T3F|1|A1|C|2489

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

RPL1A isoform 1

Chain EC

TSV IRES