IL_8T3F_113

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

8T3F|1|A1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3F_113 not in the Motif Atlas

Homologous match to IL_8P9A_339

Geometric discrepancy: 0.1535

The information below is about IL_8P9A_339

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8T3F|1|A1|U|2891
8T3F|1|A1|A|2892
*
8T3F|1|A1|U|2909
8T3F|1|A1|A|2910
8T3F|1|A1|A|2911
8T3F|1|A1|G|2912

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AO

60S ribosomal protein L16-A

Chain Am

Ubiquitin-60S ribosomal protein L40