IL_8T3F_129

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3F_129 not in the Motif Atlas

Homologous match to IL_8P9A_354

Geometric discrepancy: 0.2119

The information below is about IL_8P9A_354

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8T3F|1|A1|C|3233
8T3F|1|A1|A|3234
8T3F|1|A1|C|3235
*
8T3F|1|A1|G|3252
8T3F|1|A1|G|3253
8T3F|1|A1|G|3254

Current chains

Chain A1

25S rRNA

Nearby chains