IL_8T3F_154
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 8T3F|1|B5|U|66, 8T3F|1|B5|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3F_154 not in the Motif Atlas
- Homologous match to IL_8P9A_379
- Geometric discrepancy: 0.1993
- The information below is about IL_8P9A_379
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.1
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T3F|1|B5|U|64
8T3F|1|B5|A|65
8T3F|1|B5|U|66
8T3F|1|B5|A|67
8T3F|1|B5|A|68
8T3F|1|B5|G|69
*
8T3F|1|B5|U|82
8T3F|1|B5|G|83
8T3F|1|B5|A|84
8T3F|1|B5|A|85
8T3F|1|B5|A|86
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BG
- 40S ribosomal protein S6-A
- Chain BY
- 40S ribosomal protein S24-A
Coloring options: