IL_8T3F_163

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T3F_163 not in the Motif Atlas

Homologous match to IL_8P9A_389

Geometric discrepancy: 0.2759

The information below is about IL_8P9A_389

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8T3F|1|B5|C|270
8T3F|1|B5|A|271
8T3F|1|B5|U|272
8T3F|1|B5|G|273
*
8T3F|1|B5|U|283
8T3F|1|B5|G|284
8T3F|1|B5|G|285

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A