IL_8T3F_172

3D structure

PDB id

8T3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAUACAGGGCC*GGUCUUGUAAUU

Length

23 nucleotides

Bulged bases

8T3F|1|B5|G|487, 8T3F|1|B5|C|489, 8T3F|1|B5|G|498, 8T3F|1|B5|C|500, 8T3F|1|B5|A|505, 8T3F|1|B5|A|506, 8T3F|1|B5|U|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3F|1|B5|G|480
8T3F|1|B5|A|481
8T3F|1|B5|U|482
8T3F|1|B5|A|483
8T3F|1|B5|C|484
8T3F|1|B5|A|485
8T3F|1|B5|G|486
8T3F|1|B5|G|487
8T3F|1|B5|G|488
8T3F|1|B5|C|489
8T3F|1|B5|C|490
*
8T3F|1|B5|G|497
8T3F|1|B5|G|498
8T3F|1|B5|U|499
8T3F|1|B5|C|500
8T3F|1|B5|U|501
8T3F|1|B5|U|502
8T3F|1|B5|G|503
8T3F|1|B5|U|504
8T3F|1|B5|A|505
8T3F|1|B5|A|506
8T3F|1|B5|U|507
8T3F|1|B5|U|508

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A