3D structure

PDB id
8T3F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
Experimental method
ELECTRON MICROSCOPY
Resolution
3.09 Å

Loop

Sequence
GAAAAAAU(PSU)A*UAUAUUAGC
Length
19 nucleotides
Bulged bases
8T3F|1|B5|U|794
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T3F|1|B5|G|751
8T3F|1|B5|A|752
8T3F|1|B5|A|753
8T3F|1|B5|A|754
8T3F|1|B5|A|755
8T3F|1|B5|A|756
8T3F|1|B5|A|757
8T3F|1|B5|U|758
8T3F|1|B5|PSU|759
8T3F|1|B5|A|760
*
8T3F|1|B5|U|790
8T3F|1|B5|A|791
8T3F|1|B5|U|792
8T3F|1|B5|A|793
8T3F|1|B5|U|794
8T3F|1|B5|U|795
8T3F|1|B5|A|796
8T3F|1|B5|G|797
8T3F|1|B5|C|798

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BJ
40S ribosomal protein S9-A
Chain BL
40S ribosomal protein S11-A
Chain BW
RPS22A isoform 1

Coloring options:

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