IL_8T3F_218
3D structure
- PDB id
- 8T3F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T3F_218 not in the Motif Atlas
- Homologous match to IL_8C3A_466
- Geometric discrepancy: 0.1132
- The information below is about IL_8C3A_466
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48143.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T3F|1|B5|G|1480
8T3F|1|B5|C|1481
8T3F|1|B5|C|1482
8T3F|1|B5|A|1483
8T3F|1|B5|G|1484
8T3F|1|B5|C|1485
8T3F|1|B5|G|1486
8T3F|1|B5|A|1487
*
8T3F|1|B5|U|1519
8T3F|1|B5|U|1520
8T3F|1|B5|G|1521
8T3F|1|B5|U|1522
8T3F|1|B5|G|1523
8T3F|1|B5|A|1524
8T3F|1|B5|A|1525
8T3F|1|B5|A|1526
8T3F|1|B5|C|1527
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- RPS3 isoform 1
- Chain BF
- Rps5p
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
Coloring options: