IL_8T4S_012

3D structure

PDB id

8T4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

8T4S|1|2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T4S|1|2|G|130
8T4S|1|2|U|140
8T4S|1|2|A|141
8T4S|1|2|C|142
8T4S|1|2|U|143
8T4S|1|2|U|144
*
8T4S|1|2|A|175
8T4S|1|2|U|176
8T4S|1|2|G|177
8T4S|1|2|C|178
8T4S|1|2|C|179
8T4S|1|2|G|180
8T4S|1|2|A|181
8T4S|1|2|C|182

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

40S ribosomal protein S6